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HowToBioinformatics

Page history last edited by cereusb 13 years ago

Bioinformatics

So this is the introduction to the 'dry bench', doing experiments and developing hypothesis.

Multiple Sequence alignments, especially ClustalX.
READSEQ - cleaning up DNA sequence formatting (i.e. remove numbers)
Looking at Protein Structres, especially with PyMOL.
Protein Alignments
BioCyc Pathways tools
Cytoscape - working with and visualizing network data
Gemoda - unix/linux based system for finding motifs in a genetic sequence. (ie. identify motifs in promoters.
ExPASy - many programs for analysis of protein sequences and structures as well as 2-D PAGE