Bioinformatics

So this is the introduction to the 'dry bench', doing experiments and developing hypothesis.

Getting Data

• Genes and Proteins from Genbank
• Using BLAST to find homologues
• Setting up local Blast
• Protein 3D Structures - the pdb database.
• Finding Whole Genomes
• Finding Microarray data

Analyzing Data

• Multiple Sequence alignments, especially ClustalX.
• Looking at Protein Structres, especially with PyMOL.
• Protein Alignments
• BioCyc Pathways tools
• Gemoda - unix/linux based system for finding motifs in a genetic sequence. (ie. identify motifs in promoters.

Examples and Tutorials